Tidal channel meanders serve as stepping-stones to facilitate cordgrass landward spread by creating invasion windows.

Understanding the mechanisms by which the geomorphic structures affect habitat invasibility by mediating various abiotic and biotic factors is essential for predicting whether these geomorphic structures may provide spatial windows of opportunity to facilitate range-expansion of invasive species in salt marshes. Many studies have linked geomorphic landscape features such as tidal channels to invasion by exotic plants, but the role of tidal channel meanders (i.e., convex and concave sides) in regulating the Spartina alterniflora invasion remains unclear. Here, we examined the combined effects of tidal channel meander-mediated hydrodynamic variables, soil abiotic stresses, and propagule pressure on the colonization of Spartina in the Yellow River Delta, China, by conducting field observations and experiments. The results showed that lower hydrodynamic disturbance, bed shear stress, and higher propagule pressure triggered by eddies due to the convex structure of channel meanders facilitated Spartina seedling establishment and growth, whereas the concave side considerably inhibited the Spartina invasion. Lower soil abiotic stresses also significantly promoted the invasibility of the channel meanders by Spartina. Based on these findings, we propose a conceptual framework to illustrate the effects of the meandering geomorphology of tidal channels on the mechanisms that might allow the landward spread of Spartina and related processes. Our results demonstrate that the meandering geomorphic structures of tidal channels could act as stepping-stones to significantly facilitate the landward invasion of Spartina along tidal channels. This implies that geomorphic characteristics of tidal channels should be integrated into invasive species control and salt marsh management strategies.

Seawall-induced impacts on large river delta wetlands and blue carbon storage under sea level rise.

Coastal wetlands have been enclosed by thousands of kilometers of seawalls in China to obtain extra land for rapid socio-economic development in the coastal region. Although understanding seawall-induced impacts on delta wetlands and their ecosystem can provide valuable decision-making information to support coastal management, quantifying and measuring long-term, cumulative ecological impacts of harden seawall under sea level rise (SLR) remains a vital research gap. In this study, by combining the land-use transformation trajectory analysis, ecosystem services assessment, and the SLAMM (Sea Level Affecting Marshes Model), we have explored the seawall-induced effects on temporal-spatial dynamics of tidal wetlands and the Coastal Blue Carbon storage (CBCs) in the Yellow River Delta (YRD) under the SLR by 2050 and 2100. Our study revealed that the delta wetland area would have increased by 2327.87 km2 after seawall removal without regard for SLR while increasing by 3050 km2 in 2100 in both seawall scenarios under SLR. The effects of driving processes trajectory on the changes in CBCs indicated two-sided seawall-induced impacts on the delta wetlands in the YRD, i.e., functioning as a physical coastal defense to prevent coastal erosion (before 2050) while intensifying coastal squeeze effects and quickening the loss in delta wetlands and the CBCs by hindering their inland migration under SLR. For example, the gap of CBCs between the seawall-impacting and seawall-removal scenarios would have reached at 9.94 × 106 Mg by 2050 under the SLR, and the magnitude of the final decrease effect on CBCs induced by the seawall-impacting would be nearly 5 times higher than its gain after seawall-removal in the regressive succession, while the same magnitudes in the salinization process on both scenarios. Our study has provided valuable insights for shoreline management by mitigating seawall-induced impacts on the delta wetlands and their ecosystem services such as CBCs.

Effects of waves, burial depth and material density on microplastic retention in coastal sediments.

Coastal sediments, recognized as a major sink for microplastics (MPs), are subject to frequent physical disturbances, such as wave disturbance and associated sediment dynamics. Yet it remains poorly understood how wave disturbance regulates MPs accumulation in such a dynamic environment. Here, we examined the effects of waves and their interactions with material density and burial depth on the retention of MPs in coastal sediments, through manipulative experiments in a mangrove habitat along the coast of South China. The results clearly revealed that stronger waves removed more buried MPs from the sediments. Moreover, storms can have disproportional effects on MPs retention by inducing large waves and strong sediment erosion. We also demonstrated that MPs retention generally increased linearly with growing material density and non-linearly with raised burial depth in the sediment. Overall, our findings highlight the importance of both external and internal factors in shaping MPs retention in coastal ecosystems like mangroves, which is essential to assess and predict MPs accumulation patterns as well as its impacts on ecosystem functioning of such blue carbon habitats.

Estimating Biomass and Carbon Sequestration Capacity of Phragmites australis Using Remote Sensing and Growth Dynamics Modeling: A Case Study in Beijing Hanshiqiao Wetland Nature Reserve, China.

Estimating the biomass of Phragmites australis (Cav.) Trin. ex Steud., i.e., a common wetland macrophyte, and the associated carbon sequestration capacity has attracted increasing attention. Hanshiqiao Wetland Nature Reserve (HWNR) is a large P. australis wetland in Beijing, China, and provides an ideal case study site for such purpose in an urban setting. In this study, an existing P. australis growth dynamics model was adapted to estimate the plant biomass, which was in turn converted to the associated carbon sequestration capacity in the HWNR throughout a typical year. To account for local differences, the modeling parameters were calibrated against the above-ground biomass (AGB) of P. australis retrieved from hyperspectral images of the study site. We also analyzed the sensitivity of the modeling parameters and the influence of environmental factors, particularly the nutrient availability, on the growth dynamics and carbon sequestration capacity of P. australis. Our results show that the maximum AGB and below-ground biomass (BGB) of P. australis in the HWNR are 2.93 × 103 and 2.49 × 103 g m-2, respectively, which are higher than the reported level from nearby sites with similar latitudes, presumably due to the relatively high nutrient availability and more suitable inundation conditions in the HWNR. The annual carbon sequestration capacity of P. australis in the HWNR was estimated to be 2040.73 gC m-2 yr-1, which was also found to be highly dependent on nutrient availability, with a 50% increase (decrease) in the constant of the nutrient availability KNP, resulting in a 12% increase (23% decrease) in the annual carbon sequestration capacity. This implies that a comprehensive management of urban wetlands that often encounter eutrophication problems to synergize the effects of nutrient control and carbon sequestration is worth considering in future practices.

Effects of interactions between macroalgae and seagrass on the distribution of macrobenthic invertebrate communities at the Yellow River Estuary, China.

Algae-dominance in seagrass beds has been well recognized, however, the competitive relationship between seagrass and macroalgae along land-sea gradients and their ecological effects has received little attention. In this study, a field survey was conducted at the Yellow River Estuary to investigate the effects of macroalgal proliferation on seagrass and macrobenthic invertebrate communities. Our results suggested that strong competitive interaction existed between the two primary producers, and the positive or negative effects of macroalgae on seagrass growth varied along land-sea gradient. Furthermore, the dominant controlling factors on the biomass, density and diversity of macrobenthic invertebrate communities were found to vary accordingly, i.e., from features of the primary producers in the nearshore where macroalgae suppressed seagrass growth to hydrodynamic disturbance in the offshore where macroalgae facilitated seagrass growth. Our study emphasizes the importance to integrate interspecific competition into ecosystem-based management of seagrass ecosystem, and provides references for additional ecological indicators.

Biogeomorphological processes and structures facilitate seedling establishment and distribution of annual plants: Implications for coastal restoration.

Biogeomorphological processes and structures (BPS) can affect plant growth and community structure and promote landscape complexity in ecosystems. However, there is a lack of understanding of how BPS facilitates seedling establishment and distribution of annual plants and promotes the success of coastal restoration. We studied the relationships between seedling establishment of a native annual plant species (Suaeda salsa) and BPS resulting from crabs and plants in a middle elevation salt marsh with moderate tides (where inhabited generally high density of plants and crabs) in the Yellow River Delta of China. While there were many crabs but fewer plants in lower elevation areas with more frequent and stronger tides; and in higher elevation areas with weaker tides there were both fewer crabs and plants. Investigations and field manipulation experiments of microtopography, crabs and plants were conducted to determine if and how these BPS influenced seedling establishment and distribution under tidal influence in the middle elevation salt marshes. Results demonstrated that biogeomorphological structures, mainly concave hollows generated by crab burrowing and concave hollows around plant roots and stems under tidal influence, were associated with the trapping of seeds and influenced the establishment and distribution of seedlings. Additionally, upon senescence, maternal plants with unreleased seeds lodged on the ground and influenced seed retention and seedling establishment. The artificial concave hollows that were created experimentally also trapped many seeds and facilitated seedling establishment. Experimental plantings and creation of artificial hollow microtopography attracted crabs that created burrows, resulting in a positive feedback on seedling establishment. We used information obtained from the experimental component of the study to conduct a hollow microtopography manipulation to successfully restore degraded salt marshes. Understanding the associations between seedling establishment and biogeomorphological processes provides important insights for the utilization of natural or human ecosystem engineering to restore coastal vegetation ecosystems.

Windows of opportunity for smooth cordgrass landward invasion to tidal channel margins: The importance of hydrodynamic disturbance to seedling establishment.

Despite increasing concerns about the global threat of cordgrass (S. alterniflora) expansion and the interest in its invasion mechanisms, there is not yet a general understanding of the mechanistic processes underlying the interaction between cordgrass invasion and geomorphic structures such as tidal channels. This study elucidated the effects of the hydrodynamic disturbance of tidal channels on initial seedling establishment of cordgrass in the margins of two different types of tidal channels (i.e., main tidal channels and secondary tributaries). We performed field experiments that transplanted cordgrass seedlings to above-mentioned tidal channel margins with on-site controlled hydrodynamic conditions. The results showed that high hydrodynamic disturbance intensity (i.e., HDI) on the margin of main tidal channels (i.e., MMC) was not beneficial to cordgrass invasion, whereas low HDI created windows of opportunity for cordgrass invasion to the margin of secondary tributaries (i.e., MST) by facilitating the survival, growth, and stability of cordgrass seedlings. The presence of high HDI predominantly reduced the seedling survival and total biomass of cordgrass, whereas root biomass allocation of cordgrass increased significantly to resist dislodgment and toppling. Moreover, field investigations showed that soil salinity and moisture in the margin of tidal channels were not the limiting factors affecting the establishment of cordgrass seedlings. However, higher propagule pressure combined with suitable soil salinity-moisture conditions (i.e., low salinity and high moisture) laid a firm foundation favoring seedling establishment. Our results highlight the importance of hydrodynamic disturbance as a dominating driver regulating seedling establishment of cordgrass in tidal channel margins and the potential implications for controlling cordgrass landward invasions.

Physiological and biochemical responses of the salt-marsh plant Spartina alterniflora to long-term wave exposure.

BACKGROUND AND AIMS: Ecosystem-based flood defence including salt-marsh as a key component is increasingly applied worldwide due to its multifunctionality and cost-effectiveness. While numerous experiments have explored the wave-attenuation effects of salt-marsh plants critical to flood protection, little is known about the physiological and biochemical responses of these species to continuous wave exposure. METHODS: To address this knowledge gap, we developed a shallow-water wave simulator to expose individual Spartina alterniflora plants to waves in a greenhouse for 8 weeks. S. alterniflora individuals were partially submerged and experienced horizontal sinusoidal motion to mimic plant exposure to shallow water waves. A factorial experiment was used to test the effects of three wave heights (4.1 cm, 5.5 cm and a no-wave control) and two wave periods (2 s and 3 s) on the following key physiological and biochemical plant parameters: plant growth, antioxidant defence and photosynthetic capacity. KEY RESULTS: Comparison of wave treatment and control groups supported our hypotheses that wave exposure leads to oxidative stress in plants and suppresses plant photosynthetic capacity and thereby growth. In response, the wave-exposed plants exhibited activated antioxidant enzymes. Comparison between the different wave treatment groups suggested the wave effects to be generally correlated positively with wave height and negatively with wave period, i.e. waves with greater height and frequency imposed more stress on plants. In addition, wave-exposed plants tended to allocate more biomass to their roots. Such allocation is favourable because it enhances root anchorage against the wave impact. CONCLUSIONS: Simulated wave exposure systems such as the one used here are an effective tool for studying the response of salt-marsh plants to long-term wave exposure, and so help inform ecosystem-based flood defence projects in terms of plant selection, suitable transplantation locations and timing, etc. Given the projected variability of the global wave environment due to climate change, understanding plant response to long-term wave exposure has important implications for salt-marsh conservation and its central role in natural flood defence.

Habitat-mediated, density-dependent dispersal strategies affecting spatial dynamics of populations in an anthropogenically-modified landscape.

A major challenge in managing natural populations in ecosystems is understanding and predicting the complexity and consequences of population dispersal. Although many studies have documented the importance of conspecific density and habitat quality in the dispersal process, we lack an understanding of how to integrate these factors in determining the spatial dynamics of populations or how habitat quality can mediate density-dependent dispersal. In this study, we propose a Habitat-mediated, Density-dependent, Spatial Population Dynamics model (HD-SPDM), in which we combined a Habitat Suitability Index (HSI) with a migration function, to explore the emergent effects of habitat mediated, density-dependent dispersal strategies on the spatial dynamics of a population. Our results show that habitat condition (based on HSI score) can influence ranges in conspecific density (which in turn can alter spatial patterns of populations distributed in homogeneous patches). We tested this model using the spatial distribution of Chinese mitten crab in the Yangtze River Estuary, which has been subjected to excessive sea reclamations over time, this allowed us to obtain insight into spatial distribution of population by determining how habitat-mediated, density-dependent dispersal at a small scale interacts with habitat heterogeneity and fragmentation at a landscape scale. We found that each progressive sea reclamation reduced suitable habitat area and habitat connectivity in the estuary. However, the model predicts that intermediate intensities of habitat compression and fragmentation could improve habitat utilization somewhat by facilitating population dispersal. Our model could be used to improve resource management of populations being increasingly impacted by anthropogenic alterations.

Peptidome Analysis Reveals Novel Serum Biomarkers for Children with Autism Spectrum Disorder in China.

PURPOSE: Autism spectrum disorder (ASD) is a neurological and developmental disorder that begins early in childhood and lasts throughout one's life. Early diagnosis is essential for ASD since early treatment can enable children with ASD to make significant gains in language and social skills, but remains challenging since there are currently no specific biomarkers of ASD. This study is aimed to identify serum biomarkers for ASD. EXPERIMENTAL DESIGN: Serum of Han Chinese children with ASD (n = 68) and age-matched healthy controls (n = 80) is analyzed using magnetic bead-based separation combined with mass spectrum. RESULTS: Eight potential ASD serum biomarker peaks (m/z: 3886.69, 7775.12, 2381.71, 6638.63, 3319.17, 894.34, 4968.59, and 5910.53) with higher expression in ASD group are further identified as peptide regions of plasma serine protease inhibitor precursor (SERPINA5), platelet factor 4 (PF4), fatty acid binding protein 1(FABP1), apolipoprotein C-I precursor (APOC1), alpha-fetoprotein precursor (AFP), carboxypeptidase B2 (CPB2), trace amine-associated receptor 6 (TAAR6), and isoform1 of fibrinogen alpha chain precursor (FGA). The expression of identified proteins is validated by enzyme-linked immunosorbent assay (ELISA). CONCLUSIONS AND MEDICAL RELEVANCE: These findings reveal the exceptional disease etiology of ASD from a serum proteomic perspective, and the identified proteins might be potential biomarkers for ASD diagnosis.

Competitive ability, stress tolerance and plant interactions along stress gradients.

Exceptions to the generality of the stress-gradient hypothesis (SGH) may be reconciled by considering species-specific traits and stress tolerance strategies. Studies have tested stress tolerance and competitive ability in mediating interaction outcomes, but few have incorporated this to predict how species interactions shift between competition and facilitation along stress gradients. We used field surveys, salt tolerance and competition experiments to develop a predictive model interspecific interaction shifts across salinity stress gradients. Field survey and greenhouse tolerance tests revealed tradeoffs between stress tolerance and competitive ability. Modeling showed that along salinity gradients, (1) plant interactions shifted from competition to facilitation at high salinities within the physiological limits of salt-intolerant plants, (2) facilitation collapsed when salinity stress exceeded the physiological tolerance of salt-intolerant plants, and (3) neighbor removal experiments overestimate interspecific facilitation by including intraspecific effects. A community-level field experiment, suggested that (1) species interactions are competitive in benign and, facilitative in harsh condition, but fuzzy under medium environmental stress due to niche differences of species and weak stress amelioration, and (2) the SGH works on strong but not weak stress gradients, so SGH confusion arises when it is applied across questionable stress gradients. Our study clarifies how species interactions vary along stress gradients. Moving forward, focusing on SGH applications rather than exceptions on weak or nonexistent gradients would be most productive.

Bioavailability of trace metals in sediments of a recovering freshwater coastal wetland in China's Yellow River Delta, and risk assessment for the macrobenthic community.

We investigated the speciation of trace metals and their ecological risks to macrobenthic communities in a recovering coastal wetland of China's Yellow River Delta during the freshwater release project. We established 16 sampling sites in three restoration areas and one intertidal reference area, and collected sediments and macrobenthos four times from 2014 to 2015. The instability index for the trace metals showed a moderate risk for Mn and a high risk for Cd. For both Mn and Cd, the carbonate and FeMn-bound fractions appear to contribute mostly to the instability and bioavailability indexes, but for Cd, the exchangeable fraction also have a much higher contribution. The bioavailability index indicated higher bioavailability of trace metals in freshwater restoration areas than that in the intertidal area. The single-factor contamination index indicated that most trace metal concentrations in the macrobenthos were in excess of the national standard. The biota-sediment accumulation factor suggested that the macrobenthos accumulated most As, Cd, and Cu. Redundancy analysis showed clear relationships between the macrobenthos and sediment metal concentrations. Our results will help wetland managers to assess the bioaccumulation risks based on metal speciation, and to improve management of these recovering freshwater wetland ecosystems.

Prioritization of candidate disease genes by enlarging the seed set and fusing information of the network topology and gene expression.

The identification of disease genes is very important not only to provide greater understanding of gene function and cellular mechanisms which drive human disease, but also to enhance human disease diagnosis and treatment. Recently, high-throughput techniques have been applied to detect dozens or even hundreds of candidate genes. However, experimental approaches to validate the many candidates are usually time-consuming, tedious and expensive, and sometimes lack reproducibility. Therefore, numerous theoretical and computational methods (e.g. network-based approaches) have been developed to prioritize candidate disease genes. Many network-based approaches implicitly utilize the observation that genes causing the same or similar diseases tend to correlate with each other in gene-protein relationship networks. Of these network approaches, the random walk with restart algorithm (RWR) is considered to be a state-of-the-art approach. To further improve the performance of RWR, we propose a novel method named ESFSC to identify disease-related genes, by enlarging the seed set according to the centrality of disease genes in a network and fusing information of the protein-protein interaction (PPI) network topological similarity and the gene expression correlation. The ESFSC algorithm restarts at all of the nodes in the seed set consisting of the known disease genes and their k-nearest neighbor nodes, then walks in the global network separately guided by the similarity transition matrix constructed with PPI network topological similarity properties and the correlational transition matrix constructed with the gene expression profiles. As a result, all the genes in the network are ranked by weighted fusing the above results of the RWR guided by two types of transition matrices. Comprehensive simulation results of the 10 diseases with 97 known disease genes collected from the Online Mendelian Inheritance in Man (OMIM) database show that ESFSC outperforms existing methods for prioritizing candidate disease genes. The top prediction results of Alzheimer's disease are consistent with previous literature reports.

Effect of thimerosal on the neurodevelopment of premature rats.

BACKGROUND: This study was undertaken to determine the effect of thimerosal on the neurodevelopment of premature rats. METHODS: Thimerosal was injected into premature SD rats at a dose of 32.8, 65.6, 98.4 or 131.2 µg/kg on postnatal day 1. Expression of dopamine D4 receptor (DRD4) and serotonin 2A receptor (5-HT2AR), apoptosis in the prefrontal cortex on post-injection day 49, and learning and memory function were studied and compared with those in a control group injected with saline. RESULTS: Expression of DRD4 and 5-HT2AR and learning function decreased, and apoptosis increased significantly in the 131.2 µg/kg group (P<0.001). Memory function was significantly impaired by 65.6 (P<0.05), 98.4 and 131.2 µg/kg (P<0.001). CONCLUSIONS: The negative adverse consequences on neurodevelopment observed in the present study are consistent with previous studies; this study raised serious concerns about adverse neurodevelopmental disorder such as autism in humans following the ongoing worldwide routine administration of thimerosalcontaining vaccines to infants.